STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK56926.1Hypothetical protein; Overlaps another CDS with the same product name. (103 aa)    
Predicted Functional Partners:
EFK56930.1
Hypothetical protein.
 
     0.817
EFK56929.1
Hypothetical protein.
 
     0.816
EFK56925.1
DNA binding domain, excisionase family; Overlaps another CDS with the same product name.
 
    
0.814
traM-2
Conjugative transposon TraM protein.
 
     0.804
EFK56969.1
Hypothetical protein.
  
     0.773
EFK56970.1
Hypothetical protein.
 
     0.773
EFK57592.1
Hypothetical protein.
  
     0.771
EFK57510.1
Hypothetical protein.
  
     0.770
EFK57525.1
Hypothetical protein.
  
     0.766
EFK57509.1
Hypothetical protein.
  
     0.765
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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