STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK57021.1UbiC transcription regulator-associated domain protein; COG: COG2188; Pfam: PF00392,PF07702; InterPro: IPR011663. (244 aa)    
Predicted Functional Partners:
EFK57023.1
Putative mannose-6-phosphate isomerase, class I; InterPro: IPR014710.
 
  
 0.878
EFK57024.1
Hypothetical protein.
 
     0.831
EFK56638.1
Hypothetical protein.
  
     0.708
EFK57022.1
MFS transporter, SP family; COG: COG0477; Pfam: PF00083; InterPro: IPR003663; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
       0.585
aefA
Transporter, small conductance mechanosensitive ion channel MscS family protein; COG: COG3264; Pfam: PF00924; InterPro: IPR006685.
       0.529
hutI
Imidazolonepropionase; COG: COG1228; Pfam: PF01979; InterPro: IPR005920.
  
 
 0.522
EFK58633.1
Hypothetical protein.
  
 
 0.512
EFK57025.1
Putative alpha-1,2-mannosidase; COG: COG3537; Pfam: PF07971; InterPro: IPR005887.
  
     0.491
EFK57761.1
Hypothetical protein.
 
 
 0.449
EFK58618.1
DNA-binding helix-turn-helix protein; COG: COG1396; Pfam: PF01381,PF07883; InterPro: IPR013096.
  
  
 0.443
Your Current Organism:
Sphingobacterium spiritivorum
NCBI taxonomy Id: 525373
Other names: S. spiritivorum ATCC 33861, Sphingobacterium spiritivorum ATCC 33861, Sphingobacterium spiritivorum str. ATCC 33861, Sphingobacterium spiritivorum strain ATCC 33861
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.