STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK33300.1Predicted metal-binding protein. (125 aa)    
Predicted Functional Partners:
SFK33330.1
NifU homolog involved in Fe-S cluster formation.
 
     0.799
SFJ64646.1
Hypothetical protein.
  
     0.655
SFK51024.1
Predicted metal-binding protein.
  
     0.647
SFJ13417.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
  
     0.612
SFK33359.1
Hypothetical protein.
       0.608
SFK21279.1
Hypothetical protein.
  
     0.544
SFJ95543.1
Uncharacterized protein involved in outer membrane biogenesis.
  
     0.536
SFK21254.1
Putative zinc-or iron-chelating domain-containing protein.
  
     0.533
SFJ95569.1
YnbE-like lipoprotein.
  
     0.531
SFK11662.1
MJ0042 family finger-like domain-containing protein.
  
     0.512
Your Current Organism:
Desulfomicrobium apsheronum
NCBI taxonomy Id: 52560
Other names: D. apsheronum, DSM 5918
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