STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL26193.1Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. (468 aa)    
Predicted Functional Partners:
SFL45753.1
Penicillin-binding protein 1A.
  
   
 0.667
SFL44826.1
Signal peptidase I; Belongs to the peptidase S26 family.
 
  
 0.649
SFL55621.1
Flagellar motor switch protein FliM.
    
   0.617
SFL55755.1
Membrane-bound lytic murein transglycosylase D.
 
 
 0.593
SFL95511.1
Membrane-bound lytic murein transglycosylase D.
 
 
 0.556
rlpA
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
 
 
 0.461
SFL52628.1
Hypothetical protein.
  
   
 0.439
SFL26175.1
Hypothetical protein.
       0.418
Your Current Organism:
Desulfomicrobium norvegicum
NCBI taxonomy Id: 52561
Other names: D. norvegicum, Desulfovibrio desulfuricans (strain Norway 4), Desulfovibrio desulfuricans norway, NCIMB 8310, strain Norway 4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.