STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL29402.1Secretion system effector C (SseC) like family protein. (360 aa)    
Predicted Functional Partners:
SFL29387.1
Type III secretion low calcium response chaperone LcrH/SycD.
  
 
 0.971
SFL29539.1
Type III secretion protein J.
  
  
 0.938
SFL29451.1
Type III secretion protein D.
  
  
 0.889
SFL23459.1
Tetratricopeptide repeat-containing protein.
  
 
 0.885
SFM08316.1
Tetratricopeptide repeat-containing protein.
  
 
 0.885
SFL29324.1
Type III secretion protein W.
  
  
 0.852
SFL29239.1
Type III secretion protein V.
  
  
 0.847
SFL29223.1
Type III secretion protein S.
  
  
 0.808
SFL29445.1
Type III secretion protein C.
  
  
 0.806
SFL29651.1
Type III secretion protein R.
  
  
 0.765
Your Current Organism:
Desulfomicrobium norvegicum
NCBI taxonomy Id: 52561
Other names: D. norvegicum, Desulfovibrio desulfuricans (strain Norway 4), Desulfovibrio desulfuricans norway, NCIMB 8310, strain Norway 4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.