STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL23288.1tRNA-splicing ligase RtcB. (474 aa)    
Predicted Functional Partners:
SFL22830.1
Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family.
   
 0.834
SFL33682.1
ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.
   
 0.834
SFL44331.1
Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family.
   
 0.834
SFL96201.1
ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.
   
 0.834
SFM12869.1
ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family.
   
 0.834
SFL23272.1
Aspartate kinase; Belongs to the aspartokinase family.
       0.768
SFL28041.1
Glycerophosphoryl diester phosphodiesterase.
    
  0.680
SFL28793.1
Hypothetical protein.
  
    0.675
SFL70463.1
Hypothetical protein.
  
    0.675
SFL34394.1
3-oxoacyl-[acyl-carrier protein] reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
  0.652
Your Current Organism:
Desulfomicrobium norvegicum
NCBI taxonomy Id: 52561
Other names: D. norvegicum, Desulfovibrio desulfuricans (strain Norway 4), Desulfovibrio desulfuricans norway, NCIMB 8310, strain Norway 4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.