STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL56328.1amphi-Trp domain-containing protein. (89 aa)    
Predicted Functional Partners:
SFL56350.1
Phosphate uptake regulator.
 
     0.954
SFL56386.1
Ribosomal protein S6--L-glutamate ligase.
 
     0.949
SFL56411.1
HprK-related kinase B.
 
     0.949
SFL56435.1
CofD-related protein, GAK system.
 
     0.933
SFL56305.1
Hypothetical protein.
       0.768
SFL56283.1
XXXCH domain-containing protein.
       0.755
SFL56457.1
amphi-Trp domain-containing protein.
       0.707
SFL56262.1
Glycosyltransferase involved in cell wall bisynthesis.
       0.502
SFM13996.1
Bacterial condensin subunit MukB.
  
     0.489
SFL25685.1
Nitrate reductase gamma subunit.
  
     0.482
Your Current Organism:
Desulfomicrobium norvegicum
NCBI taxonomy Id: 52561
Other names: D. norvegicum, Desulfovibrio desulfuricans (strain Norway 4), Desulfovibrio desulfuricans norway, NCIMB 8310, strain Norway 4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.