STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL84959.1Lipid biosynthesis B12-binding/radical SAM protein. (460 aa)    
Predicted Functional Partners:
SFL84825.1
Predicted 3-hydroxylacyl-ACP dehydratase, HotDog domain.
 
     0.931
SFL85006.1
Lipid A biosynthesis acyltransferase.
 
     0.929
SFL84854.1
Outer membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
    0.928
SFL84984.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.921
SFL84880.1
Predicted exporter.
 
     0.914
SFL85023.1
Acyl carrier protein.
 
     0.899
SFL84803.1
Radical SAM additional 4Fe4S-binding SPASM domain-containing protein.
 
  
 0.894
SFL84937.1
acyl-CoA thioester hydrolase.
 
    0.886
SFL85067.1
3-oxoacyl-[acyl-carrier-protein] synthase II; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
     0.840
SFL84683.1
All-trans-retinol 13,14-reductase.
 
  
 0.833
Your Current Organism:
Desulfomicrobium norvegicum
NCBI taxonomy Id: 52561
Other names: D. norvegicum, Desulfovibrio desulfuricans (strain Norway 4), Desulfovibrio desulfuricans norway, NCIMB 8310, strain Norway 4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.