STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL83334.1Transposase. (286 aa)    
Predicted Functional Partners:
SFL83277.1
Histidine kinase.
 
     0.821
SFL33587.1
Predicted phosphohydrolase or phosphomutase, AlkP superfamily.
  
     0.692
SFL45942.1
Outer membrane protein assembly factor BamD, BamD/ComL family.
  
     0.680
SFL83258.1
Anti-anti-sigma factor.
 
     0.677
SFL43329.1
poly(A) polymerase.
 
     0.640
SFL51911.1
Tfp pilus assembly protein PilF.
  
     0.632
SFL99660.1
Cytochrome c554 and c-prime.
  
    0.625
SFL83311.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
 
     0.616
SFL52136.1
Hypothetical protein.
  
     0.600
SFL33803.1
Spore maturation protein CgeB.
  
     0.594
Your Current Organism:
Desulfomicrobium norvegicum
NCBI taxonomy Id: 52561
Other names: D. norvegicum, Desulfovibrio desulfuricans (strain Norway 4), Desulfovibrio desulfuricans norway, NCIMB 8310, strain Norway 4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.