SFL95336.1 protein (Desulfomicrobium norvegicum)

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second shell of interactors

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a 3D structure is known or predicted

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Edges represent protein-protein associations

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Score

SFL95336.1

Type VI secretion system protein. (129 aa)

Predicted Functional Partners:

SFL95301.1

0.985

SFL95375.1

0.983

SFL95356.1

0.981

SFL95321.1

0.981

SFL95276.1

0.961

SFL95458.1

0.958

SFL95478.1

0.953

SFL95442.1

0.952

SFL95494.1

0.944

SFL95427.1

0.925

Your Current Organism:

Desulfomicrobium norvegicum

NCBI taxonomy Id: 52561
Other names: D. norvegicum, Desulfovibrio desulfuricans (strain Norway 4), Desulfovibrio desulfuricans norway, NCIMB 8310, strain Norway 4

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFL95276.1	SFL95301.1	SAMN05421830_1106	SAMN05421830_1107	Type VI secretion-associated protein, VC_A0119 family.	Type VI secretion system protein ImpB.	0.986
SFL95276.1	SFL95321.1	SAMN05421830_1106	SAMN05421830_1108	Type VI secretion-associated protein, VC_A0119 family.	Type VI secretion system protein ImpC.	0.978
SFL95276.1	SFL95336.1	SAMN05421830_1106	SAMN05421830_1109	Type VI secretion-associated protein, VC_A0119 family.	Type VI secretion system protein.	0.961
SFL95276.1	SFL95356.1	SAMN05421830_1106	SAMN05421830_11010	Type VI secretion-associated protein, VC_A0119 family.	Type VI secretion system protein ImpG.	0.951
SFL95276.1	SFL95375.1	SAMN05421830_1106	SAMN05421830_11011	Type VI secretion-associated protein, VC_A0119 family.	Type VI secretion system protein ImpH.	0.995
SFL95276.1	SFL95427.1	SAMN05421830_1106	SAMN05421830_11014	Type VI secretion-associated protein, VC_A0119 family.	Type VI secretion system protein ImpI.	0.898
SFL95276.1	SFL95442.1	SAMN05421830_1106	SAMN05421830_11015	Type VI secretion-associated protein, VC_A0119 family.	Type VI secretion system protein VasD.	0.930
SFL95276.1	SFL95458.1	SAMN05421830_1106	SAMN05421830_11016	Type VI secretion-associated protein, VC_A0119 family.	Type VI secretion system protein ImpJ.	0.964
SFL95276.1	SFL95478.1	SAMN05421830_1106	SAMN05421830_11017	Type VI secretion-associated protein, VC_A0119 family.	Type VI secretion system protein ImpK.	0.929
SFL95276.1	SFL95494.1	SAMN05421830_1106	SAMN05421830_11018	Type VI secretion-associated protein, VC_A0119 family.	Type VI secretion system protein ImpL.	0.955
SFL95301.1	SFL95276.1	SAMN05421830_1107	SAMN05421830_1106	Type VI secretion system protein ImpB.	Type VI secretion-associated protein, VC_A0119 family.	0.986
SFL95301.1	SFL95321.1	SAMN05421830_1107	SAMN05421830_1108	Type VI secretion system protein ImpB.	Type VI secretion system protein ImpC.	0.999
SFL95301.1	SFL95336.1	SAMN05421830_1107	SAMN05421830_1109	Type VI secretion system protein ImpB.	Type VI secretion system protein.	0.985
SFL95301.1	SFL95356.1	SAMN05421830_1107	SAMN05421830_11010	Type VI secretion system protein ImpB.	Type VI secretion system protein ImpG.	0.983
SFL95301.1	SFL95375.1	SAMN05421830_1107	SAMN05421830_11011	Type VI secretion system protein ImpB.	Type VI secretion system protein ImpH.	0.990
SFL95301.1	SFL95427.1	SAMN05421830_1107	SAMN05421830_11014	Type VI secretion system protein ImpB.	Type VI secretion system protein ImpI.	0.954
SFL95301.1	SFL95442.1	SAMN05421830_1107	SAMN05421830_11015	Type VI secretion system protein ImpB.	Type VI secretion system protein VasD.	0.977
SFL95301.1	SFL95458.1	SAMN05421830_1107	SAMN05421830_11016	Type VI secretion system protein ImpB.	Type VI secretion system protein ImpJ.	0.992
SFL95301.1	SFL95478.1	SAMN05421830_1107	SAMN05421830_11017	Type VI secretion system protein ImpB.	Type VI secretion system protein ImpK.	0.978
SFL95301.1	SFL95494.1	SAMN05421830_1107	SAMN05421830_11018	Type VI secretion system protein ImpB.	Type VI secretion system protein ImpL.	0.970

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Network Stats

number of nodes:

2

number of edges:

1

average node degree:

1

avg. local clustering coefficient:

1

expected number of edges:

1

PPI enrichment p-value:

0.5

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006313

Transposition, DNA-mediated

3 of 26

2.05

1.91

0.0017

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0004803

Transposase activity

3 of 26

2.05

2.07

0.00091

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:5874

DDE transposase sub-family, and Transposase domain (DUF772)

3 of 5

2.77

3.52

2.04e-05

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0042597

Periplasmic space

3 of 76

1.58

1.27

0.0076

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF05598

Transposase domain (DUF772)

2 of 5

2.59

1.55

0.0092

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR025668

Transposase DDE domain

2 of 3

2.81

1.5

0.0113

IPR008490

Transposase InsH, N-terminal

2 of 5

2.59

1.47

0.0118

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM01489

DDE transposase sub-family

2 of 2

2.99

2.48

0.00061

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