STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM04365.1TRAP-type C4-dicarboxylate transport system, small permease component. (185 aa)    
Predicted Functional Partners:
SFM04381.1
C4-dicarboxylate transporter, DctM subunit.
 
 0.982
SFM04400.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
 
 0.947
SFL65758.1
Extracellular solute-binding protein, family 7.
 
 
 0.869
SFM03782.1
C4-dicarboxylate transporter, DctM subunit.
 
 0.862
SFL33158.1
C4-dicarboxylate transporter, DctM subunit.
 
 0.850
SFM10919.1
C4-dicarboxylate transporter, DctM subunit.
 
 0.850
SFL65713.1
C4-dicarboxylate transporter, DctM subunit.
 
0.848
SFL24769.1
C4-dicarboxylate transporter, DctM subunit.
 
 0.835
SFM10585.1
TRAP transporter, DctM subunit.
  
 0.811
SFL65736.1
Extracellular solute-binding protein, family 7.
 
 
 0.789
Your Current Organism:
Desulfomicrobium norvegicum
NCBI taxonomy Id: 52561
Other names: D. norvegicum, Desulfovibrio desulfuricans (strain Norway 4), Desulfovibrio desulfuricans norway, NCIMB 8310, strain Norway 4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.