STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM12065.1Type VI secretion system secreted protein VgrG. (676 aa)    
Predicted Functional Partners:
SFL95276.1
Type VI secretion-associated protein, VC_A0119 family.
 
 
 0.950
SFL95375.1
Type VI secretion system protein ImpH.
 
 
 0.923
SFL95301.1
Type VI secretion system protein ImpB.
 
  
 0.902
SFL95321.1
Type VI secretion system protein ImpC.
  
 0.870
SFL95478.1
Type VI secretion system protein ImpK.
 
  
 0.866
SFL95336.1
Type VI secretion system protein.
 
  
 0.863
SFL95442.1
Type VI secretion system protein VasD.
 
  
 0.837
SFL95356.1
Type VI secretion system protein ImpG.
 
  
 0.830
SFL95257.1
Type VI secretion system secreted protein Hcp.
 
  
 0.818
SFL95458.1
Type VI secretion system protein ImpJ.
  
 0.816
Your Current Organism:
Desulfomicrobium norvegicum
NCBI taxonomy Id: 52561
Other names: D. norvegicum, Desulfovibrio desulfuricans (strain Norway 4), Desulfovibrio desulfuricans norway, NCIMB 8310, strain Norway 4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.