STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM12183.1Putative regulatory protein, FmdB family. (80 aa)    
Predicted Functional Partners:
gmhA
D-sedoheptulose 7-phosphate isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
       0.789
hemC
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
       0.741
SFM15650.1
Hypothetical protein.
  
     0.668
SFL97044.1
Prokaryotic molybdopterin-containing oxidoreductase family, membrane subunit.
  
     0.505
SFM15634.1
Putative zinc-or iron-chelating domain-containing protein.
  
     0.477
SFM15748.1
Dissimilatory sulfite reductase D (DsrD).
  
     0.450
SFL41583.1
Class III cytochrome C family protein; Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin.
 
   
 0.443
SFL24231.1
Membrane protease subunit, stomatin/prohibitin family, contains C-terminal Zn-ribbon domain.
  
     0.428
SFM15782.1
Hypothetical protein.
  
     0.420
SFL52660.1
Hypothetical protein.
  
    0.415
Your Current Organism:
Desulfomicrobium norvegicum
NCBI taxonomy Id: 52561
Other names: D. norvegicum, Desulfovibrio desulfuricans (strain Norway 4), Desulfovibrio desulfuricans norway, NCIMB 8310, strain Norway 4
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