STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM17837.1AraC-type DNA-binding protein. (308 aa)    
Predicted Functional Partners:
SFM17824.1
Alcohol dehydrogenase/hypothetical protein.
  
    0.807
SFM17965.1
AraC-type DNA-binding protein.
 
 
 0.734
rpoD
RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.678
SFL61086.1
RNA polymerase, sigma 32 subunit, RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
   
 
 0.678
SFL72095.1
AraC-type DNA-binding protein.
 
 
 0.665
SFL27790.1
Nicotinamidase-related amidase.
 
    0.552
SFM17775.1
Predicted oxidoreductase.
 
     0.549
SFL93445.1
Repressor LexA.
   
 
 0.488
SFM01405.1
DNA polymerase V; Belongs to the peptidase S24 family.
   
 
 0.488
SFM17858.1
Predicted transcriptional regulator.
       0.485
Your Current Organism:
Desulfomicrobium norvegicum
NCBI taxonomy Id: 52561
Other names: D. norvegicum, Desulfovibrio desulfuricans (strain Norway 4), Desulfovibrio desulfuricans norway, NCIMB 8310, strain Norway 4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.