Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDK50792.1 | SDK63472.1 | SAMN04487971_101213 | SAMN04487971_10274 | Hypothetical protein. | Hypothetical protein. | 0.726 |
SDK50792.1 | SDL67325.1 | SAMN04487971_101213 | SAMN04487971_11735 | Hypothetical protein. | Periplasmic chaperone for outer membrane proteins Skp. | 0.681 |
SDK50792.1 | ftsQ | SAMN04487971_101213 | SAMN04487971_10287 | Hypothetical protein. | Cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily. | 0.719 |
SDK63472.1 | SDK50792.1 | SAMN04487971_10274 | SAMN04487971_101213 | Hypothetical protein. | Hypothetical protein. | 0.726 |
SDK63472.1 | SDK63500.1 | SAMN04487971_10274 | SAMN04487971_10275 | Hypothetical protein. | Cell division protein FtsI (penicillin-binding protein 3). | 0.860 |
SDK63472.1 | SDL67325.1 | SAMN04487971_10274 | SAMN04487971_11735 | Hypothetical protein. | Periplasmic chaperone for outer membrane proteins Skp. | 0.698 |
SDK63472.1 | ftsQ | SAMN04487971_10274 | SAMN04487971_10287 | Hypothetical protein. | Cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily. | 0.733 |
SDK63472.1 | mraY | SAMN04487971_10274 | SAMN04487971_10278 | Hypothetical protein. | Phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.832 |
SDK63472.1 | mraZ | SAMN04487971_10274 | SAMN04487971_10272 | Hypothetical protein. | MraZ protein; Belongs to the MraZ family. | 0.853 |
SDK63472.1 | murD | SAMN04487971_10274 | SAMN04487971_10280 | Hypothetical protein. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.670 |
SDK63472.1 | murE | SAMN04487971_10274 | SAMN04487971_10276 | Hypothetical protein. | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.832 |
SDK63472.1 | murF | SAMN04487971_10274 | SAMN04487971_10277 | Hypothetical protein. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.832 |
SDK63472.1 | rsmH | SAMN04487971_10274 | SAMN04487971_10273 | Hypothetical protein. | 16S rRNA (cytosine1402-N4)-methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | 0.853 |
SDK63500.1 | SDK63472.1 | SAMN04487971_10275 | SAMN04487971_10274 | Cell division protein FtsI (penicillin-binding protein 3). | Hypothetical protein. | 0.860 |
SDK63500.1 | ftsQ | SAMN04487971_10275 | SAMN04487971_10287 | Cell division protein FtsI (penicillin-binding protein 3). | Cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily. | 0.964 |
SDK63500.1 | mraY | SAMN04487971_10275 | SAMN04487971_10278 | Cell division protein FtsI (penicillin-binding protein 3). | Phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.930 |
SDK63500.1 | mraZ | SAMN04487971_10275 | SAMN04487971_10272 | Cell division protein FtsI (penicillin-binding protein 3). | MraZ protein; Belongs to the MraZ family. | 0.933 |
SDK63500.1 | murD | SAMN04487971_10275 | SAMN04487971_10280 | Cell division protein FtsI (penicillin-binding protein 3). | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.938 |
SDK63500.1 | murE | SAMN04487971_10275 | SAMN04487971_10276 | Cell division protein FtsI (penicillin-binding protein 3). | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.994 |
SDK63500.1 | murF | SAMN04487971_10275 | SAMN04487971_10277 | Cell division protein FtsI (penicillin-binding protein 3). | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.961 |
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