Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDL18561.1 | SDL18587.1 | SAMN04487971_10791 | SAMN04487971_10792 | Hypothetical protein. | Cytochrome c-type biogenesis protein CcmH. | 0.432 |
SDL18561.1 | SDL18613.1 | SAMN04487971_10791 | SAMN04487971_10793 | Hypothetical protein. | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.432 |
SDL18561.1 | SDL18643.1 | SAMN04487971_10791 | SAMN04487971_10794 | Hypothetical protein. | Hypothetical protein. | 0.432 |
SDL18587.1 | SDL18561.1 | SAMN04487971_10792 | SAMN04487971_10791 | Cytochrome c-type biogenesis protein CcmH. | Hypothetical protein. | 0.432 |
SDL18587.1 | SDL18613.1 | SAMN04487971_10792 | SAMN04487971_10793 | Cytochrome c-type biogenesis protein CcmH. | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.853 |
SDL18587.1 | SDL18643.1 | SAMN04487971_10792 | SAMN04487971_10794 | Cytochrome c-type biogenesis protein CcmH. | Hypothetical protein. | 0.877 |
SDL18587.1 | SDL18670.1 | SAMN04487971_10792 | SAMN04487971_10795 | Cytochrome c-type biogenesis protein CcmH. | Cell division protein ZapE. | 0.495 |
SDL18613.1 | SDL18561.1 | SAMN04487971_10793 | SAMN04487971_10791 | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Hypothetical protein. | 0.432 |
SDL18613.1 | SDL18587.1 | SAMN04487971_10793 | SAMN04487971_10792 | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Cytochrome c-type biogenesis protein CcmH. | 0.853 |
SDL18613.1 | SDL18643.1 | SAMN04487971_10793 | SAMN04487971_10794 | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Hypothetical protein. | 0.853 |
SDL18613.1 | SDL18670.1 | SAMN04487971_10793 | SAMN04487971_10795 | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Cell division protein ZapE. | 0.495 |
SDL18613.1 | SDL88428.1 | SAMN04487971_10793 | SAMN04487971_13312 | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family. | 0.824 |
SDL18613.1 | alaS | SAMN04487971_10793 | SAMN04487971_102257 | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.721 |
SDL18613.1 | ispDF | SAMN04487971_10793 | SAMN04487971_10617 | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D- erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C- methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF). | 0.525 |
SDL18613.1 | miaA | SAMN04487971_10793 | SAMN04487971_11726 | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.605 |
SDL18613.1 | ruvA | SAMN04487971_10793 | SAMN04487971_101274 | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Holliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.430 |
SDL18613.1 | topA | SAMN04487971_10793 | SAMN04487971_101301 | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | DNA topoisomerase-1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.481 |
SDL18643.1 | SDL18561.1 | SAMN04487971_10794 | SAMN04487971_10791 | Hypothetical protein. | Hypothetical protein. | 0.432 |
SDL18643.1 | SDL18587.1 | SAMN04487971_10794 | SAMN04487971_10792 | Hypothetical protein. | Cytochrome c-type biogenesis protein CcmH. | 0.877 |
SDL18643.1 | SDL18613.1 | SAMN04487971_10794 | SAMN04487971_10793 | Hypothetical protein. | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.853 |
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