STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dbac_0010TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: dde:Dde_1415 type I secretion outer membrane protein, TolC. (443 aa)    
Predicted Functional Partners:
Dbac_0004
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: dvl:Dvul_1976 HlyD family type I secretion membrane fusion protein.
 
 
 0.881
Dbac_1882
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: dde:Dde_1419 type I secretion membrane fusion protein, HlyD.
 
 
 0.880
Dbac_2016
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: dde:Dde_1419 type I secretion membrane fusion protein, HlyD.
 
 
 0.880
Dbac_0005
Type I secretion system ATPase; KEGG: dvl:Dvul_1977 ABC transporter related; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.
 
  
 0.824
Dbac_1881
KEGG: bac:BamMC406_6076 type I secretion system ATPase; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase.
 
  
 0.823
Dbac_0008
PFAM: Hemolysin-type calcium-binding region; KEGG: paa:Paes_0782 von Willebrand factor type A.
 
  
 0.818
Dbac_0003
PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: dde:Dde_1420 hypothetical protein.
 
   
 0.784
Dbac_0006
PFAM: von Willebrand factor type A; Hemolysin-type calcium-binding region; peptidase domain protein; SMART: von Willebrand factor type A; KEGG: pmy:Pmen_1806 hemolysin-type calcium-binding region.
  
  
 0.764
Dbac_1341
PFAM: GAF domain protein; KEGG: dol:Dole_0618 putative phytochrome sensor protein.
 
   0.637
Dbac_2982
PFAM: secretion protein HlyD family protein; KEGG: gme:Gmet_1375 secretion protein HlyD.
  
 
 0.636
Your Current Organism:
Desulfomicrobium baculatum
NCBI taxonomy Id: 525897
Other names: D. baculatum DSM 4028, Desulfomicrobium baculatum DSM 4028, Desulfomicrobium baculatum str. DSM 4028, Desulfomicrobium baculatum strain DSM 4028
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