STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dbac_0017KEGG: dvl:Dvul_0429 hypothetical protein. (273 aa)    
Predicted Functional Partners:
Dbac_3301
PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase; KEGG: dvl:Dvul_1932 hypothetical protein.
 
  
 0.954
Dbac_0709
PFAM: protein of unknown function DUF111; KEGG: dde:Dde_0766 hypothetical protein; Belongs to the LarC family.
  
 0.922
Dbac_2152
KEGG: mta:Moth_1926 hypothetical protein.
 
  
 0.919
Dbac_3138
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: dde:Dde_1190 cobalt transport protein CbiM.
 
    0.749
Dbac_0016
PFAM: beta-lactamase domain protein; KEGG: sth:STH2476 putative cyclase/dehydrase.
  
    0.587
nth
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
 
    0.552
Dbac_1786
PFAM: protein of unknown function DUF362; KEGG: dde:Dde_3247 hypothetical protein.
 
     0.544
Dbac_3099
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dps:DP1667 iron-sulfur cluster-binding protein.
 
    0.487
Dbac_0015
PFAM: Domain of unknown function DUF1791; KEGG: afu:AF0913 hypothetical protein.
       0.473
Dbac_0334
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cth:Cthe_1546 4Fe-4S ferredoxin, iron-sulfur binding.
 
    0.459
Your Current Organism:
Desulfomicrobium baculatum
NCBI taxonomy Id: 525897
Other names: D. baculatum DSM 4028, Desulfomicrobium baculatum DSM 4028, Desulfomicrobium baculatum str. DSM 4028, Desulfomicrobium baculatum strain DSM 4028
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.