STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dbac_0277KEGG: dde:Dde_3773 hypothetical protein. (123 aa)    
Predicted Functional Partners:
Dbac_0276
PFAM: protein of unknown function UPF0153; KEGG: dvl:Dvul_0114 hypothetical protein.
 
     0.956
Dbac_0279
KEGG: dol:Dole_2669 sulfite reductase, dissimilatory-type alpha subunit; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region.
   
   0.895
Dbac_0278
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_3772 TPR repeat-containing protein.
 
     0.850
Dbac_0283
KEGG: dol:Dole_2099 hypothetical protein.
 
     0.826
Dbac_0281
PFAM: Dissimilatory sulfite reductase D; KEGG: dde:Dde_0528 dissimilatory sulfite reductase B.
 
     0.800
Dbac_0567
PFAM: cytochrome c class III; KEGG: dde:Dde_3710 acidic cytochrome c3.
  
     0.754
Dbac_3393
PFAM: Polysulphide reductase NrfD; KEGG: dvl:Dvul_2271 molybdopterin oxidoreductase, transmembrane subunit, putative.
  
     0.751
Dbac_3006
KEGG: dde:Dde_3184 hypothetical protein.
  
     0.747
Dbac_0572
KEGG: dol:Dole_2254 hmc operon protein 5.
  
     0.723
Dbac_1484
KEGG: dvl:Dvul_1688 HesB/YadR/YfhF-family protein.
  
     0.718
Your Current Organism:
Desulfomicrobium baculatum
NCBI taxonomy Id: 525897
Other names: D. baculatum DSM 4028, Desulfomicrobium baculatum DSM 4028, Desulfomicrobium baculatum str. DSM 4028, Desulfomicrobium baculatum strain DSM 4028
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.