STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dbac_0415Deoxyribodipyrimidine photo-lyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: ppd:Ppro_2012 deoxyribodipyrimidine photolyase. (452 aa)    
Predicted Functional Partners:
Dbac_2060
PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: dvl:Dvul_0395 hypothetical protein.
  
  
 0.939
Dbac_0413
PFAM: protein of unknown function DUF490; KEGG: rce:RC1_3925 hypothetical protein.
       0.760
Dbac_0414
PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: rru:Rru_A2099 surface antigen.
       0.754
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
    
   0.720
Dbac_1911
PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: pca:Pcar_1772 protein-tyrosine-phosphatase.
    
   0.720
Dbac_2112
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; chalcone and stilbene synthase domain protein; KEGG: pna:Pnap_2676 chalcone and stilbene synthases domain protein.
    
   0.720
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
    
   0.720
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
   0.520
Dbac_1121
KEGG: sfu:Sfum_3716 phosphopantetheine-binding.
   
   0.520
Dbac_1550
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: nph:NP0006A ABC-type transport system ATP- binding protein.
   
 
 0.509
Your Current Organism:
Desulfomicrobium baculatum
NCBI taxonomy Id: 525897
Other names: D. baculatum DSM 4028, Desulfomicrobium baculatum DSM 4028, Desulfomicrobium baculatum str. DSM 4028, Desulfomicrobium baculatum strain DSM 4028
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.