STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dbac_0446KEGG: sat:SYN_01170 putative cytoplasmic protein. (100 aa)    
Predicted Functional Partners:
Dbac_2277
PFAM: Cobyrinic acid ac-diamide synthase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_3409 cobyrinic acid a,c-diamide synthase.
 
     0.710
Dbac_2278
PFAM: protein of unknown function DUF134; Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: sfu:Sfum_3410 dinitrogenase iron-molybdenum cofactor biosynthesis; Belongs to the UPF0251 family.
 
     0.710
Dbac_2301
KEGG: pca:Pcar_1581 hypothetical protein.
 
     0.709
Dbac_2276
PFAM: Cobyrinic acid ac-diamide synthase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_3408 cobyrinic acid a,c-diamide synthase.
 
     0.702
Dbac_0447
PFAM: nitrogen-fixing NifU domain protein; KEGG: pth:PTH_0581 NifU-like protein.
       0.646
Dbac_0448
PFAM: Protein of unknown function CGGC region; KEGG: dol:Dole_0792 hypothetical protein.
       0.614
Dbac_2299
PFAM: beta-lactamase domain protein; KEGG: pca:Pcar_1589 beta-lactamase superfamily hydrolase.
 
     0.474
Your Current Organism:
Desulfomicrobium baculatum
NCBI taxonomy Id: 525897
Other names: D. baculatum DSM 4028, Desulfomicrobium baculatum DSM 4028, Desulfomicrobium baculatum str. DSM 4028, Desulfomicrobium baculatum strain DSM 4028
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