STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dbac_0610PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: dsh:Dshi_1249 IclR family transcriptional regulator. (255 aa)    
Predicted Functional Partners:
Dbac_1975
PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: dvl:Dvul_0527 GntR domain-containing protein.
 
  
 0.588
Dbac_1979
Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: nca:Noca_1174 GntR family transcriptional regulator.
  
  
 0.552
Dbac_1480
PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; SMART: phospholipid/glycerol acyltransferase; KEGG: sun:SUN_1164 2-acyl-glycerophospho- ethanolamine acyltransferase.
  
 
 0.549
Dbac_2821
PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; KEGG: gsu:GSU3396 GntR family transcriptional regulator.
 
  
 0.526
Dbac_3146
PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: dvu:DVU2802 GntR family transcriptional regulator.
 
  
 0.502
Dbac_2157
PFAM: conserved hypothetical protein; KEGG: dsy:DSY3249 hypothetical protein.
 
  
 0.461
Dbac_0609
PFAM: protein of unknown function DUF107; KEGG: abm:ABSDF0717 hypothetical protein.
  
    0.447
Dbac_2158
PFAM: protein of unknown function DUF112 transmembrane; KEGG: dsy:DSY3248 hypothetical protein.
 
    0.445
Dbac_0608
PFAM: band 7 protein; SMART: band 7 protein; KEGG: aci:ACIAD2967 putative membrane protease subunit.
       0.437
Dbac_0611
PFAM: Extracellular ligand-binding receptor; KEGG: lip:LI0496 branched chain amino acid ABC transporter, periplasmic amino acid-binding protein.
  
    0.436
Your Current Organism:
Desulfomicrobium baculatum
NCBI taxonomy Id: 525897
Other names: D. baculatum DSM 4028, Desulfomicrobium baculatum DSM 4028, Desulfomicrobium baculatum str. DSM 4028, Desulfomicrobium baculatum strain DSM 4028
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.