STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dbac_0711PFAM: peptidase U32; KEGG: dvl:Dvul_2306 peptidase U32. (417 aa)    
Predicted Functional Partners:
Dbac_0712
PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: dvl:Dvul_2305 phosphotransferase domain- containing protein.
       0.823
Dbac_0710
PFAM: protein of unknown function DUF188; KEGG: eca:ECA0873 hypothetical protein; Belongs to the UPF0178 family.
       0.785
infA
Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.
       0.522
Dbac_0124
Hypothetical protein; KEGG: kcr:Kcr_0841 O-methyltransferase-like protein.
  
  
 0.521
Dbac_0668
PFAM: O-methyltransferase family 3; Methyltransferase type 11; KEGG: drm:Dred_1444 O-methyltransferase family protein.
  
  
 0.521
Your Current Organism:
Desulfomicrobium baculatum
NCBI taxonomy Id: 525897
Other names: D. baculatum DSM 4028, Desulfomicrobium baculatum DSM 4028, Desulfomicrobium baculatum str. DSM 4028, Desulfomicrobium baculatum strain DSM 4028
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.