STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dbac_0770PFAM: major facilitator superfamily MFS_1; KEGG: mgm:Mmc1_2537 major facilitator superfamily MFS_1. (388 aa)    
Predicted Functional Partners:
Dbac_0771
PFAM: GCN5-related N-acetyltransferase; KEGG: hma:rrnAC0745 acetyltransferase.
       0.773
Dbac_0772
KEGG: neu:NE1277 hypothetical protein.
       0.634
Dbac_2982
PFAM: secretion protein HlyD family protein; KEGG: gme:Gmet_1375 secretion protein HlyD.
 
 
 0.442
thiG
Thiazole biosynthesis family protein; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
     
 0.438
Dbac_0775
TIGRFAM: thiazole biosynthesis protein ThiH; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; KEGG: dde:Dde_1556 thiamine biosynthesis protein ThiH.
     
 0.414
Dbac_1480
PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; SMART: phospholipid/glycerol acyltransferase; KEGG: sun:SUN_1164 2-acyl-glycerophospho- ethanolamine acyltransferase.
     
 0.410
Dbac_2981
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sfu:Sfum_3317 drug resistance transporter, EmrB/QacA subfamily.
  
   
 0.407
Dbac_0774
PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dvl:Dvul_1138 thiamine biosynthesis protein ThiF.
       0.403
Your Current Organism:
Desulfomicrobium baculatum
NCBI taxonomy Id: 525897
Other names: D. baculatum DSM 4028, Desulfomicrobium baculatum DSM 4028, Desulfomicrobium baculatum str. DSM 4028, Desulfomicrobium baculatum strain DSM 4028
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