STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dbac_0855PFAM: Rubrerythrin; KEGG: dde:Dde_1214 hypothetical protein. (158 aa)    
Predicted Functional Partners:
Dbac_0853
KEGG: dde:Dde_1212 hydrogenase, putative.
 
 
   0.956
Dbac_0854
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: dde:Dde_1213 hydrogenase, putative.
 
 
 
 0.937
Dbac_0852
PFAM: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_1211 hydrogenase, iron-sulfur cluster- binding subunit, putative.
 
     0.923
Dbac_0848
KEGG: dde:Dde_1207 heterodisulfide reductase, C subunit.
 
     0.882
Dbac_0851
PFAM: methyl-viologen-reducing hydrogenase delta subunit; KEGG: dde:Dde_3527 hydrogenase, iron-sulfur cluster- binding subunit, putative.
 
 
   0.864
Dbac_0849
CoB--CoM heterodisulfide reductase; PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: dde:Dde_1208 succinate dehydrogenase subunit C.
 
    0.859
Dbac_0850
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_1209 heterodisulfide reductase, A subunit.
 
     0.825
Dbac_2703
KEGG: dvl:Dvul_0169 hypothetical protein.
 
     0.467
Dbac_0574
PFAM: UspA domain protein; KEGG: dol:Dole_2256 UspA domain-containing protein.
  
    0.436
Dbac_2468
PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: dde:Dde_3572 type I phosphodiesterase/nucleotide pyrophosphatase family protein.
  
     0.422
Your Current Organism:
Desulfomicrobium baculatum
NCBI taxonomy Id: 525897
Other names: D. baculatum DSM 4028, Desulfomicrobium baculatum DSM 4028, Desulfomicrobium baculatum str. DSM 4028, Desulfomicrobium baculatum strain DSM 4028
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.