STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dbac_1007PFAM: Mammalian cell entry related domain protein; KEGG: dde:Dde_2299 putative ABC transport system substrate-binding protein. (152 aa)    
Predicted Functional Partners:
Dbac_1009
PFAM: protein of unknown function DUF140; KEGG: dvu:DVU1246 hypothetical protein.
 
 0.998
Dbac_1008
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sat:SYN_01263 ABC-type transport system involved in resistance to organic solvents, ATPase component.
 
 0.997
Dbac_0468
PFAM: protein of unknown function DUF140; Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dol:Dole_1017 hypothetical protein.
 
 0.995
Dbac_1006
PFAM: toluene tolerance family protein; KEGG: sat:SYN_01265 toluene tolerance protein.
 
 0.995
Dbac_0467
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lbf:LBF_0734 ATP-binding protein of an ABC transporter complex.
 
 0.982
Dbac_1005
PFAM: VacJ family lipoprotein; KEGG: dde:Dde_2301 surface lipoprotein-like.
 
   
 0.946
Dbac_0466
PFAM: Mammalian cell entry related domain protein; KEGG: dol:Dole_1015 hypothetical protein.
  
  
 0.927
Dbac_0347
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dde:Dde_0720 anti-anti-sigma regulatory factor, SpoIIAA; Belongs to the anti-sigma-factor antagonist family.
  
   0.814
Dbac_0867
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dol:Dole_2687 anti-sigma-factor antagonist.
  
   0.813
Dbac_0976
Anti-sigma-factor antagonist; PFAM: response regulator receiver; Sulfate transporter/antisigma-factor antagonist STAS; SMART: response regulator receiver; KEGG: dde:Dde_0710 response regulator receiver domain-containing protein.
  
   0.813
Your Current Organism:
Desulfomicrobium baculatum
NCBI taxonomy Id: 525897
Other names: D. baculatum DSM 4028, Desulfomicrobium baculatum DSM 4028, Desulfomicrobium baculatum str. DSM 4028, Desulfomicrobium baculatum strain DSM 4028
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