Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Dbac_1024KEGG: tbd:Tbd_0485 hypothetical protein. (170 aa)    
Predicted Functional Partners:
Dbac_1025
PFAM: regulatory protein TetR; KEGG: gme:Gmet_0803 TetR family transcriptional regulator.
 
  
 0.830
Dbac_1600
KEGG: mca:MCA2285 hypothetical protein.
  
     0.530
Dbac_0224
TIGRFAM: C_GCAxxG_C_C family protein; KEGG: glo:Glov_3529 C_GCAxxG_C_C family protein.
  
     0.478
Dbac_1909
PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: dde:Dde_2782 hypothetical protein.
  
   
 0.422
Dbac_1143
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pae:PA0848 alkyl hydroperoxide reductase.
  
  
 0.400
Dbac_2098
KEGG: dol:Dole_2161 peroxiredoxin-like protein.
  
  
 0.400
Dbac_2099
KEGG: amt:Amet_1461 alkyl hydroperoxide reductase.
  
  
 0.400
Your Current Organism:
Desulfomicrobium baculatum
NCBI taxonomy Id: 525897
Other names: D. baculatum DSM 4028, Desulfomicrobium baculatum DSM 4028, Desulfomicrobium baculatum str. DSM 4028, Desulfomicrobium baculatum strain DSM 4028
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