STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
katGCatalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. (735 aa)    
Predicted Functional Partners:
Dbac_1180
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
    
 0.930
hisC
TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: dvu:DVU1029 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
     
 0.905
Dbac_2014
PFAM: aminotransferase class I and II; KEGG: aau:AAur_1949 aspartate aminotransferase.
     
  0.900
Dbac_2987
PFAM: aminotransferase class I and II; KEGG: dde:Dde_3596 L-aspartate aminotransferase.
     
  0.900
Dbac_3303
PFAM: aminotransferase class I and II; KEGG: dvl:Dvul_2140 aspartate aminotransferase.
     
  0.900
Dbac_2809
PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; Chorismate mutase; KEGG: dvu:DVU0462 chorismate mutase/prephenate dehydratase.
     
  0.800
Dbac_0073
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
     
 0.552
Dbac_1163
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
     
 0.552
Dbac_2066
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
     
 0.552
Dbac_1138
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: dvl:Dvul_1323 thioredoxin; Belongs to the thioredoxin family.
   
 
 0.458
Your Current Organism:
Desulfomicrobium baculatum
NCBI taxonomy Id: 525897
Other names: D. baculatum DSM 4028, Desulfomicrobium baculatum DSM 4028, Desulfomicrobium baculatum str. DSM 4028, Desulfomicrobium baculatum strain DSM 4028
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