STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dbac_1344KEGG: dol:Dole_0621 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (237 aa)    
Predicted Functional Partners:
Dbac_2951
PFAM: acriflavin resistance protein; KEGG: gsu:GSU2782 AcrB/AcrD/AcrF family protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.976
Dbac_1338
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: dol:Dole_0611 TolC family type I secretion outer membrane protein.
 
 0.973
Dbac_2799
PFAM: outer membrane efflux protein; KEGG: dde:Dde_3627 outer membrane efflux protein.
 
 0.953
Dbac_0102
TIGRFAM: transporter, hydrophobe/amphiphile efflux- 1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: ppd:Ppro_0330 hydrophobe/amphiphile efflux-1 (HAE1) family protein.
 
 0.949
Dbac_2360
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: dps:DP2835 outer membrane protein (OprM).
 
 0.877
Dbac_1341
PFAM: GAF domain protein; KEGG: dol:Dole_0618 putative phytochrome sensor protein.
 
  
 0.860
Dbac_0101
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: gur:Gura_3497 RND efflux system outer membrane lipoprotein.
  
 0.859
Dbac_2178
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: har:HEAR2593 putative outer membrane transport protein involved in copper (silver) tolerance (CusC).
  
 0.859
Dbac_1342
KEGG: dol:Dole_0619 M50 family peptidase.
 
     0.822
Dbac_3056
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: gme:Gmet_3128 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.696
Your Current Organism:
Desulfomicrobium baculatum
NCBI taxonomy Id: 525897
Other names: D. baculatum DSM 4028, Desulfomicrobium baculatum DSM 4028, Desulfomicrobium baculatum str. DSM 4028, Desulfomicrobium baculatum strain DSM 4028
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