STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dbac_1724TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: ret:RHE_PC00213 probable C4-dicarboxylate transport system, substrate-binding protein. (350 aa)    
Predicted Functional Partners:
Dbac_1722
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: azo:azo0921 putative TRAP-type C4- dicarboxylate transport system, large permease.
  
 0.900
Dbac_1723
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: dsy:DSY4255 hypothetical protein.
 
  
 0.899
Dbac_1589
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: dde:Dde_1274 TRAP dicarboxylate transporter- DctM subunit.
  
 0.893
Dbac_2444
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: bcl:ABC4078 C4-dicarboxylate transport system permease small protein.
 
  
 0.842
Dbac_2445
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dsy:DSY4744 hypothetical protein.
  
 0.800
Dbac_2149
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: vvy:VVA1579 TRAP-type C4-dicarboxylate transport system, large permease component.
  
 0.799
Dbac_1706
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dde:Dde_2214 TRAP dicarboxylate transporter- DctM subunit.
  
 0.796
Dbac_0620
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ppr:PBPRB1887 putative C4-dicarboxylate transport protein.
  
 0.795
Dbac_2148
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: rsh:Rsph17029_3543 tripartite ATP-independent periplasmic transporter DctQ.
 
  
 0.576
Dbac_0619
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: hch:HCH_06606 TRAP-type C4-dicarboxylate transport system, small permease component.
 
  
 0.535
Your Current Organism:
Desulfomicrobium baculatum
NCBI taxonomy Id: 525897
Other names: D. baculatum DSM 4028, Desulfomicrobium baculatum DSM 4028, Desulfomicrobium baculatum str. DSM 4028, Desulfomicrobium baculatum strain DSM 4028
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