STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dbac_1810PFAM: SufBD protein; KEGG: dvl:Dvul_1973 SufBD protein. (393 aa)    
Predicted Functional Partners:
Dbac_1811
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1445 ATPase.
 
 0.998
Dbac_1165
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sat:SYN_03206 ABC transporter ATP-binding protein.
 
 0.957
Dbac_0533
PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: cpc:Cpar_0242 nitrogen-fixing NifU domain protein.
  
  
 0.770
Dbac_0447
PFAM: nitrogen-fixing NifU domain protein; KEGG: pth:PTH_0581 NifU-like protein.
  
  
 0.718
Dbac_1809
KEGG: dde:Dde_1443 hypothetical protein.
       0.632
coaE
Pseudouridine synthase, RluA family; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
     
 0.591
Dbac_1812
PFAM: Rhomboid family protein; KEGG: dde:Dde_1446 rhomboid family protein.
       0.572
Dbac_1484
KEGG: dvl:Dvul_1688 HesB/YadR/YfhF-family protein.
  
 
 0.539
Dbac_2865
KEGG: dde:Dde_2018 HesB-like domain-containing protein.
  
 
 0.539
Dbac_0701
PFAM: UspA domain protein; KEGG: sfu:Sfum_2870 UspA domain protein.
  
    0.445
Your Current Organism:
Desulfomicrobium baculatum
NCBI taxonomy Id: 525897
Other names: D. baculatum DSM 4028, Desulfomicrobium baculatum DSM 4028, Desulfomicrobium baculatum str. DSM 4028, Desulfomicrobium baculatum strain DSM 4028
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.