STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dbac_1981KEGG: sat:SYN_01773 hypothetical protein. (163 aa)    
Predicted Functional Partners:
Dbac_1983
PFAM: Fimbrial assembly family protein; KEGG: dps:DP0109 fimbrial assembly protein PilN.
 
 
 0.998
Dbac_1982
KEGG: dol:Dole_0331 pilus assembly protein PilO.
 
 
 0.996
Dbac_1980
TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: swp:swp_2065 type II and III secretion system protein:NolW-like protein.
 
 
 0.993
Dbac_1984
TIGRFAM: type IV pilus assembly protein PilM; KEGG: gme:Gmet_0971 type IV pilus assembly protein PilM.
 
 
 0.975
Dbac_1759
PFAM: type II secretion system protein; KEGG: sat:SYN_01284 general secretion pathway protein F.
    
 
 0.797
Dbac_1133
Hypothetical protein; KEGG: dol:Dole_3051 response regulator receiver protein.
  
     0.742
Dbac_3436
Hypothetical protein; KEGG: sfu:Sfum_2553 type II secretory pathway component PulJ-like.
  
  
 0.660
Dbac_0392
KEGG: csa:Csal_2859 response regulator receiver modulated diguanylate cyclase.
  
     0.659
Dbac_0759
PFAM: Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: sat:SYN_01418 LysM domain-containing protein.
  
  
 0.646
Dbac_2908
Hypothetical protein; KEGG: dol:Dole_2368 nuclease.
  
     0.643
Your Current Organism:
Desulfomicrobium baculatum
NCBI taxonomy Id: 525897
Other names: D. baculatum DSM 4028, Desulfomicrobium baculatum DSM 4028, Desulfomicrobium baculatum str. DSM 4028, Desulfomicrobium baculatum strain DSM 4028
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.