STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dbac_2002Spermidine/putrescine ABC transporter ATPase subunit; KEGG: scl:sce9160 spermidine/putrescine transport system ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily. (341 aa)    
Predicted Functional Partners:
Dbac_2003
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cyb:CYB_1299 spermidine/putrescine ABC transporter, permease protein.
 
 0.993
Dbac_2004
Ornithine carbamoyltransferase; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cyb:CYB_2209 spermidine/putrescine ABC transporter, permease protein PotC.
 
 
 0.993
Dbac_2005
Extracellular solute-binding protein family 1; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
 
 0.992
Dbac_1848
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kpe:KPK_3421 spermidine/putrescine ABC transporter, permease protein PotB.
 0.974
Dbac_1847
Ornithine carbamoyltransferase; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvu:DVU0096 spermidine/putrescine ABC transporter membrane protein.
 
 0.972
Dbac_1767
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3888 binding-protein-dependent transport systems inner membrane component.
 0.969
Dbac_1846
Extracellular solute-binding protein family 1; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
 
 0.964
Dbac_1766
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_01474 ABC-type spermidine/putrescine transport system, permease component II.
 
 
 0.959
Dbac_1769
PFAM: extracellular solute-binding protein family 1; KEGG: hch:HCH_01471 spermidine/putrescine-binding periplasmic protein.
 
 
 0.941
Dbac_1768
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rfr:Rfer_3223 ABC transporter related; Belongs to the ABC transporter superfamily.
  
  
 
0.911
Your Current Organism:
Desulfomicrobium baculatum
NCBI taxonomy Id: 525897
Other names: D. baculatum DSM 4028, Desulfomicrobium baculatum DSM 4028, Desulfomicrobium baculatum str. DSM 4028, Desulfomicrobium baculatum strain DSM 4028
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