Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Dbac_2003PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cyb:CYB_1299 spermidine/putrescine ABC transporter, permease protein. (301 aa)    
Predicted Functional Partners:
Dbac_2004
Ornithine carbamoyltransferase; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cyb:CYB_2209 spermidine/putrescine ABC transporter, permease protein PotC.
 0.996
Dbac_2002
Spermidine/putrescine ABC transporter ATPase subunit; KEGG: scl:sce9160 spermidine/putrescine transport system ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 0.994
Dbac_2005
Extracellular solute-binding protein family 1; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
 
 0.994
Dbac_1766
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_01474 ABC-type spermidine/putrescine transport system, permease component II.
 
 0.984
potA
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
 0.979
Dbac_1768
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rfr:Rfer_3223 ABC transporter related; Belongs to the ABC transporter superfamily.
 
 0.977
Dbac_1769
PFAM: extracellular solute-binding protein family 1; KEGG: hch:HCH_01471 spermidine/putrescine-binding periplasmic protein.
 
 
 0.977
Dbac_1846
Extracellular solute-binding protein family 1; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
 
 0.977
Dbac_1847
Ornithine carbamoyltransferase; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvu:DVU0096 spermidine/putrescine ABC transporter membrane protein.
0.964
Dbac_1767
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3888 binding-protein-dependent transport systems inner membrane component.
  
  
 
0.922
Your Current Organism:
Desulfomicrobium baculatum
NCBI taxonomy Id: 525897
Other names: D. baculatum DSM 4028, Desulfomicrobium baculatum DSM 4028, Desulfomicrobium baculatum str. DSM 4028, Desulfomicrobium baculatum strain DSM 4028
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