Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Dbac_2016TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: dde:Dde_1419 type I secretion membrane fusion protein, HlyD. (480 aa)    
Predicted Functional Partners:
Dbac_0005
Type I secretion system ATPase; KEGG: dvl:Dvul_1977 ABC transporter related; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.
 
 0.914
Dbac_1881
KEGG: bac:BamMC406_6076 type I secretion system ATPase; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase.
 
 
 0.913
Dbac_0010
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: dde:Dde_1415 type I secretion outer membrane protein, TolC.
 
 
 0.870
Dbac_1875
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: vpa:VP1634 agglutination protein.
 
 
 0.865
Dbac_1878
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: ppr:PBPRB0583 putative agglutination protein.
 
 
 0.865
Dbac_0006
PFAM: von Willebrand factor type A; Hemolysin-type calcium-binding region; peptidase domain protein; SMART: von Willebrand factor type A; KEGG: pmy:Pmen_1806 hemolysin-type calcium-binding region.
 
  
 0.788
Dbac_0008
PFAM: Hemolysin-type calcium-binding region; KEGG: paa:Paes_0782 von Willebrand factor type A.
 
  
 0.782
Dbac_0003
PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: dde:Dde_1420 hypothetical protein.
 
  
 0.779
Dbac_2015
Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: amt:Amet_3141 two component LuxR family transcriptional regulator.
  
  
 0.694
Dbac_1879
PFAM: Hemolysin-type calcium-binding region; KEGG: cli:Clim_1874 hemolysin-type calcium-binding region.
 
  
 0.633
Your Current Organism:
Desulfomicrobium baculatum
NCBI taxonomy Id: 525897
Other names: D. baculatum DSM 4028, Desulfomicrobium baculatum DSM 4028, Desulfomicrobium baculatum str. DSM 4028, Desulfomicrobium baculatum strain DSM 4028
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