Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Dbac_2017PFAM: metal-dependent phosphohydrolase HD sub domain; response regulator receiver; SMART: response regulator receiver; KEGG: pha:PSHAa1150 response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase). (379 aa)    
Predicted Functional Partners:
Dbac_2111
Diguanylate cyclase; KEGG: cja:CJA_1985 sensory box/GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein.
 
    0.892
Dbac_0419
Multi-sensor hybrid histidine kinase; KEGG: mag:amb2930 sensor protein BarA; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Hpt domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; response regulator receiver; histidine kinase HAMP region domain protein.
  
 
 0.667
Dbac_0652
KEGG: dvl:Dvul_1301 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein.
 
  
 0.665
Dbac_1471
KEGG: shw:Sputw3181_0268 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein.
    0.653
Dbac_0866
KEGG: cyt:cce_1877 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; response regulator receiver; SMART: EAL domain protein; GGDEF domain containing protein; response regulator receiver.
 
 
 0.616
Dbac_0471
KEGG: sal:Sala_1695 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAS domain containing protein.
 
 0.596
Dbac_3141
Diguanylate cyclase; KEGG: hch:HCH_02106 response regulator; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CHASE4 domain protein; histidine kinase HAMP region domain protein; SMART: GGDEF domain containing protein; histidine kinase HAMP region domain protein.
 
  
 0.581
Dbac_1149
KEGG: pfo:Pfl01_4666 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein.
 
    0.554
Dbac_1900
Diguanylate cyclase with PAS/PAC sensor; KEGG: dps:DP2951 hypothetical protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: GGDEF domain containing protein; PAC repeat- containing protein; PAS domain containing protein.
 
 0.545
Dbac_0207
KEGG: dvl:Dvul_2208 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein.
  
    0.540
Your Current Organism:
Desulfomicrobium baculatum
NCBI taxonomy Id: 525897
Other names: D. baculatum DSM 4028, Desulfomicrobium baculatum DSM 4028, Desulfomicrobium baculatum str. DSM 4028, Desulfomicrobium baculatum strain DSM 4028
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