Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Dbac_2575KEGG: shn:Shewana3_1797 CopG family transcriptional regulator. (97 aa)    
Predicted Functional Partners:
Dbac_2576
PFAM: plasmid stabilization system; KEGG: plu:plu2306 hypothetical protein.
 
 
 0.988
Dbac_0457
PFAM: plasmid stabilization system; KEGG: cpb:Cphamn1_1668 plasmid stabilization system.
  
 
 0.790
Dbac_1113
PFAM: plasmid stabilization system; KEGG: mhu:Mhun_0714 hypothetical protein.
 
 
 0.777
Dbac_2937
PFAM: plasmid stabilization system; KEGG: pmy:Pmen_2126 plasmid stabilization system protein.
  
 
 0.743
Dbac_1044
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein.
   
  
 0.411
Dbac_1573
TIGRFAM: prevent-host-death family protein; KEGG: bpy:Bphyt_4380 prevent-host-death family protein.
  
     0.410
Dbac_2574
Hypothetical protein.
       0.410
Your Current Organism:
Desulfomicrobium baculatum
NCBI taxonomy Id: 525897
Other names: D. baculatum DSM 4028, Desulfomicrobium baculatum DSM 4028, Desulfomicrobium baculatum str. DSM 4028, Desulfomicrobium baculatum strain DSM 4028
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