STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dbac_2587Hypothetical protein. (40 aa)    
Predicted Functional Partners:
Dbac_2588
PFAM: type IV pilus assembly PilZ.
       0.757
Dbac_2585
KEGG: sat:SYN_00781 hypothetical protein.
       0.705
Dbac_2586
PFAM: polysaccharide export protein; KEGG: sat:SYN_01205 periplasmic protein involved in polysaccharide export.
       0.705
Dbac_2584
PFAM: lipopolysaccharide biosynthesis protein; KEGG: sat:SYN_01204 chain length determinant protein, Wzz-like protein.
       0.410
Your Current Organism:
Desulfomicrobium baculatum
NCBI taxonomy Id: 525897
Other names: D. baculatum DSM 4028, Desulfomicrobium baculatum DSM 4028, Desulfomicrobium baculatum str. DSM 4028, Desulfomicrobium baculatum strain DSM 4028
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.