STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dbac_2829PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dvl:Dvul_1780 response regulator receiver protein. (134 aa)    
Predicted Functional Partners:
Dbac_2830
Signal transduction histidine kinase, nitrogen specific, NtrB; KEGG: dde:Dde_0558 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein.
 
   0.894
Dbac_2828
Response regulator receiver sensor signal transduction histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; KEGG: amr:AM1_6357 signal transduction histidine kinase.
 
 
  
0.799
Dbac_2162
KEGG: gme:Gmet_0780 MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; PFAM: MCP methyltransferase CheR-type; CheB methylesterase; PAS fold-4 domain protein; SMART: MCP methyltransferase CheR-type.
 
  
 0.557
Dbac_2643
Multi-sensor signal transduction histidine kinase; KEGG: pca:Pcar_2854 putative two component signal transduction protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAC repeat-containing protein.
 
 
   0.555
Dbac_2652
Signal transduction histidine kinase, nitrogen specific, NtrB; KEGG: dvl:Dvul_3022 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein.
 
 
 0.545
Dbac_1410
MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; KEGG: mbu:Mbur_0399 MCP methyltransferase, CheR- type; TIGRFAM: PAS sensor protein; PFAM: MCP methyltransferase CheR-type; CheB methylesterase; PAS fold-4 domain protein; PAS fold domain protein; SMART: MCP methyltransferase CheR-type; PAS domain containing protein.
  
 
 0.544
Dbac_0419
Multi-sensor hybrid histidine kinase; KEGG: mag:amb2930 sensor protein BarA; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Hpt domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; response regulator receiver; histidine kinase HAMP region domain protein.
  
 
 0.543
Dbac_2727
Signal transduction histidine kinase, nitrogen specific, NtrB; KEGG: dde:Dde_0558 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; GAF domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; GAF domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein.
 
 
 0.543
Dbac_1041
Signal transduction histidine kinase, nitrogen specific, NtrB; KEGG: dvl:Dvul_0350 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein.
 
 
 0.530
Dbac_2831
PFAM: protein of unknown function DUF554; KEGG: dvl:Dvul_1184 hypothetical protein.
       0.491
Your Current Organism:
Desulfomicrobium baculatum
NCBI taxonomy Id: 525897
Other names: D. baculatum DSM 4028, Desulfomicrobium baculatum DSM 4028, Desulfomicrobium baculatum str. DSM 4028, Desulfomicrobium baculatum strain DSM 4028
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