STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dbac_2861PFAM: NLP/P60 protein; KEGG: dvl:Dvul_2088 NLP/P60 protein. (459 aa)    
Predicted Functional Partners:
Dbac_0050
KEGG: dvl:Dvul_0727 hypothetical protein.
  
     0.622
Dbac_2862
PFAM: protein of unknown function DUF161; KEGG: dvl:Dvul_0536 hypothetical protein.
       0.537
Dbac_3466
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
   0.514
Dbac_3358
KEGG: dvl:Dvul_2186 hypothetical protein.
  
     0.465
Dbac_0055
KEGG: dvl:Dvul_1863 DNA polymerase III, delta.
 
     0.464
Dbac_1772
KEGG: lip:LI0507 hypothetical protein.
 
  
 0.429
Dbac_2859
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_1075 iron-sulfur cluster-binding protein.
       0.425
Dbac_2860
PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: dvl:Dvul_2794 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
       0.425
Dbac_2728
PFAM: Lytic transglycosylase catalytic; Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: dde:Dde_3580 peptidoglycan-binding LysM.
  
  
 0.413
Dbac_2306
PFAM: protein of unknown function DUF721; KEGG: dde:Dde_3136 hypothetical protein.
  
     0.401
Your Current Organism:
Desulfomicrobium baculatum
NCBI taxonomy Id: 525897
Other names: D. baculatum DSM 4028, Desulfomicrobium baculatum DSM 4028, Desulfomicrobium baculatum str. DSM 4028, Desulfomicrobium baculatum strain DSM 4028
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