STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dbac_2929PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pmy:Pmen_0674 TRAP C4-dicarboxylate transport system permease DctM subunit. (441 aa)    
Predicted Functional Partners:
Dbac_2930
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pmy:Pmen_0673 tripartite ATP-independent periplasmic transporter DctQ.
 
  
 0.962
Dbac_2931
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: oan:Oant_3880 TRAP dicarboxylate transporter- DctP subunit.
 
  
 0.906
Dbac_2928
Beta-N-acetylhexosaminidase; PFAM: glycoside hydrolase family 3 domain protein; KEGG: dde:Dde_2559 beta-N-acetylhexosaminidase.
       0.570
Dbac_1708
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dde:Dde_2216 extracellular solute-binding protein.
 
     0.554
Dbac_2927
PFAM: Ethanolamine ammonia lyase large subunit; KEGG: cak:Caul_3531 ethanolamine ammonia lyase large subunit.
       0.466
Dbac_2926
PFAM: Ethanolamine ammonia-lyase light chain; KEGG: cak:Caul_3530 ethanolamine ammonia-lyase; Belongs to the EutC family.
       0.462
Dbac_1769
PFAM: extracellular solute-binding protein family 1; KEGG: hch:HCH_01471 spermidine/putrescine-binding periplasmic protein.
  
     0.451
Dbac_1766
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_01474 ABC-type spermidine/putrescine transport system, permease component II.
  
     0.422
Your Current Organism:
Desulfomicrobium baculatum
NCBI taxonomy Id: 525897
Other names: D. baculatum DSM 4028, Desulfomicrobium baculatum DSM 4028, Desulfomicrobium baculatum str. DSM 4028, Desulfomicrobium baculatum strain DSM 4028
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.