STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dbac_3142PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: aha:AHA_3853 amino acid transporter LysE. (208 aa)    
Predicted Functional Partners:
Dbac_3144
PFAM: protein of unknown function DUF6 transmembrane; KEGG: cvi:CV_1361 hypothetical protein.
     
 0.688
Dbac_3143
PFAM: t-RNA-binding domain protein; KEGG: dge:Dgeo_0786 t-RNA-binding region.
       0.680
Dbac_3141
Diguanylate cyclase; KEGG: hch:HCH_02106 response regulator; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CHASE4 domain protein; histidine kinase HAMP region domain protein; SMART: GGDEF domain containing protein; histidine kinase HAMP region domain protein.
       0.513
Dbac_3145
KEGG: dde:Dde_1612 hypothetical protein.
       0.427
Your Current Organism:
Desulfomicrobium baculatum
NCBI taxonomy Id: 525897
Other names: D. baculatum DSM 4028, Desulfomicrobium baculatum DSM 4028, Desulfomicrobium baculatum str. DSM 4028, Desulfomicrobium baculatum strain DSM 4028
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.