Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Dbac_3203PFAM: protein of unknown function DUF55; KEGG: dde:Dde_1357 hypothetical protein. (153 aa)    
Predicted Functional Partners:
Dbac_3202
KEGG: dvl:Dvul_2132 hypothetical protein.
       0.503
Dbac_3201
KEGG: dde:Dde_1113 heterodisulfide reductase, transmembrane subunit, putative.
       0.466
Dbac_3199
KEGG: dvl:Dvul_2135 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
       0.463
Dbac_3200
PFAM: methyl-viologen-reducing hydrogenase delta subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dvu:DVU0849 heterodisulfide reductase, iron- sulfur-binding subunit, putative.
       0.463
Your Current Organism:
Desulfomicrobium baculatum
NCBI taxonomy Id: 525897
Other names: D. baculatum DSM 4028, Desulfomicrobium baculatum DSM 4028, Desulfomicrobium baculatum str. DSM 4028, Desulfomicrobium baculatum strain DSM 4028
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