Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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Textmining
[Homology]
Score
Dbac_3205PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_0261 ATPase. (255 aa)    
Predicted Functional Partners:
Dbac_3206
PFAM: inner-membrane translocator; KEGG: dde:Dde_0260 branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.989
Dbac_3207
PFAM: inner-membrane translocator; KEGG: dde:Dde_0259 branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.968
Dbac_0997
PFAM: inner-membrane translocator; KEGG: ppd:Ppro_1673 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.942
Dbac_3208
PFAM: Extracellular ligand-binding receptor; KEGG: dvl:Dvul_2254 extracellular ligand-binding receptor.
 
  
 0.922
Dbac_1407
PFAM: inner-membrane translocator; KEGG: ppd:Ppro_1673 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.911
Dbac_2500
PFAM: inner-membrane translocator; KEGG: dvl:Dvul_2395 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.906
Dbac_1213
PFAM: inner-membrane translocator; KEGG: dge:Dgeo_0733 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.886
Dbac_3204
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvl:Dvul_2250 ABC transporter related.
 
  
0.883
Dbac_2284
PFAM: inner-membrane translocator; KEGG: sth:STH706 branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.873
Dbac_0612
PFAM: inner-membrane translocator; KEGG: lip:LI0497 branched chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.854
Your Current Organism:
Desulfomicrobium baculatum
NCBI taxonomy Id: 525897
Other names: D. baculatum DSM 4028, Desulfomicrobium baculatum DSM 4028, Desulfomicrobium baculatum str. DSM 4028, Desulfomicrobium baculatum strain DSM 4028
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