STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dbac_3299PFAM: glycosyl transferase group 1; KEGG: dvl:Dvul_1933 glycosyl transferase, group 1. (362 aa)    
Predicted Functional Partners:
Dbac_3298
Hypothetical protein.
       0.807
Dbac_3300
PFAM: polysaccharide deacetylase; KEGG: bbr:BB3399 hypothetical protein.
 
    0.803
Dbac_3301
PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase; KEGG: dvl:Dvul_1932 hypothetical protein.
  
    0.779
Dbac_0231
PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1656 glycosyl transferase, group 1 family protein.
  
     0.726
Dbac_1755
PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0256 glycosyl transferase, group 1 family protein.
  
     0.721
Dbac_2206
PFAM: glycosyl transferase group 1; KEGG: dvl:Dvul_3055 glycosyl transferase, group 1.
  
     0.675
Dbac_0230
PFAM: glycosyl transferase group 1; KEGG: dvl:Dvul_0615 glycosyl transferase, group 1.
  
     0.668
Dbac_2209
PFAM: glycosyl transferase group 1; KEGG: dvu:DVUA0051 glycosyl transferase, group 1 family protein.
  
     0.645
Dbac_3291
TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: mfa:Mfla_2028 sugar transferase.
 
  
 0.584
Dbac_1698
TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: tcx:Tcr_1675 undecaprenyl-phosphate galactosephosphotransferase.
 
  
 0.575
Your Current Organism:
Desulfomicrobium baculatum
NCBI taxonomy Id: 525897
Other names: D. baculatum DSM 4028, Desulfomicrobium baculatum DSM 4028, Desulfomicrobium baculatum str. DSM 4028, Desulfomicrobium baculatum strain DSM 4028
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.