STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dbac_3396PFAM: Radical SAM domain protein; KEGG: dvl:Dvul_2680 anaerobic ribonucleoside- triphosphate reductase activating protein. (212 aa)    
Predicted Functional Partners:
Dbac_3397
TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; PFAM: ATP-cone domain protein; KEGG: dvl:Dvul_2681 anaerobic ribonucleoside triphosphate reductase.
 
  
 0.943
Dbac_1587
PFAM: pyruvate formate-lyase PFL; formate C- acetyltransferase glycine radical; KEGG: dde:Dde_1273 formate C-acetyltransferase.
  
  
 0.508
Dbac_2145
PFAM: pyruvate formate-lyase PFL; formate C- acetyltransferase glycine radical; KEGG: dde:Dde_1273 formate C-acetyltransferase.
  
  
 0.508
Dbac_2366
PFAM: pyruvate formate-lyase PFL; formate C- acetyltransferase glycine radical; KEGG: dps:DP0616 formate C-acetyltransferase.
  
  
 0.508
Dbac_1044
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein.
     
 0.431
Dbac_3395
PFAM: major facilitator superfamily MFS_1; KEGG: pca:Pcar_2162 hypothetical protein.
       0.404
Your Current Organism:
Desulfomicrobium baculatum
NCBI taxonomy Id: 525897
Other names: D. baculatum DSM 4028, Desulfomicrobium baculatum DSM 4028, Desulfomicrobium baculatum str. DSM 4028, Desulfomicrobium baculatum strain DSM 4028
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.