STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dbac_3457PFAM: amino acid permease-associated region; KEGG: ckl:CKL_3373 permease. (413 aa)    
Predicted Functional Partners:
Dbac_2914
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: tcx:Tcr_1797 alpha amylase, catalytic region.
   
 0.947
Dbac_3458
KEGG: dde:Dde_1333 hypothetical protein.
       0.564
Dbac_3456
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: gur:Gura_1198 LysR family transcriptional regulator.
  
    0.547
Dbac_2061
KEGG: dol:Dole_2478 hypothetical protein.
    
 0.523
Dbac_2809
PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; Chorismate mutase; KEGG: dvu:DVU0462 chorismate mutase/prephenate dehydratase.
   
 
 0.466
Dbac_2090
PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; TrkA-C domain protein; KEGG: dvl:Dvul_0955 sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
  
 0.429
Dbac_1184
PFAM: FAD dependent oxidoreductase; Rieske [2Fe-2S] domain protein; KEGG: scl:sce2646 oxidoreductase.
  
 
 0.418
Dbac_1640
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamine amidotransferase class-II; KEGG: gsu:GSU3450 glutamate synthase-related protein.
  
  
 0.401
Dbac_0419
Multi-sensor hybrid histidine kinase; KEGG: mag:amb2930 sensor protein BarA; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Hpt domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; response regulator receiver; histidine kinase HAMP region domain protein.
  
  
 0.400
Your Current Organism:
Desulfomicrobium baculatum
NCBI taxonomy Id: 525897
Other names: D. baculatum DSM 4028, Desulfomicrobium baculatum DSM 4028, Desulfomicrobium baculatum str. DSM 4028, Desulfomicrobium baculatum strain DSM 4028
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