Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Sdel_0004 | Sdel_0006 | Sdel_0004 | Sdel_0006 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: cff:CFF8240_0004 diguanylate cyclase/phosphodiesterase, putative. | 0.723 |
| Sdel_0004 | Sdel_0008 | Sdel_0004 | Sdel_0008 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | KEGG: abu:Abu_0634 hypothetical protein. | 0.729 |
| Sdel_0004 | Sdel_0010 | Sdel_0004 | Sdel_0010 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.700 |
| Sdel_0004 | Sdel_0541 | Sdel_0004 | Sdel_0541 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | KEGG: sun:SUN_0644 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase. | 0.856 |
| Sdel_0004 | gyrB | Sdel_0004 | Sdel_0005 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.917 |
| Sdel_0004 | ung | Sdel_0004 | Sdel_0009 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.837 |
| Sdel_0006 | Sdel_0004 | Sdel_0006 | Sdel_0004 | PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: cff:CFF8240_0004 diguanylate cyclase/phosphodiesterase, putative. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.723 |
| Sdel_0006 | Sdel_0008 | Sdel_0006 | Sdel_0008 | PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: cff:CFF8240_0004 diguanylate cyclase/phosphodiesterase, putative. | KEGG: abu:Abu_0634 hypothetical protein. | 0.813 |
| Sdel_0006 | Sdel_0010 | Sdel_0006 | Sdel_0010 | PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: cff:CFF8240_0004 diguanylate cyclase/phosphodiesterase, putative. | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.412 |
| Sdel_0006 | gyrB | Sdel_0006 | Sdel_0005 | PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: cff:CFF8240_0004 diguanylate cyclase/phosphodiesterase, putative. | DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.809 |
| Sdel_0006 | ung | Sdel_0006 | Sdel_0009 | PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: cff:CFF8240_0004 diguanylate cyclase/phosphodiesterase, putative. | uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.412 |
| Sdel_0008 | Sdel_0004 | Sdel_0008 | Sdel_0004 | KEGG: abu:Abu_0634 hypothetical protein. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.729 |
| Sdel_0008 | Sdel_0006 | Sdel_0008 | Sdel_0006 | KEGG: abu:Abu_0634 hypothetical protein. | PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: cff:CFF8240_0004 diguanylate cyclase/phosphodiesterase, putative. | 0.813 |
| Sdel_0008 | Sdel_0010 | Sdel_0008 | Sdel_0010 | KEGG: abu:Abu_0634 hypothetical protein. | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.517 |
| Sdel_0008 | gyrB | Sdel_0008 | Sdel_0005 | KEGG: abu:Abu_0634 hypothetical protein. | DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.812 |
| Sdel_0008 | ung | Sdel_0008 | Sdel_0009 | KEGG: abu:Abu_0634 hypothetical protein. | uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.412 |
| Sdel_0010 | Sdel_0004 | Sdel_0010 | Sdel_0004 | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.700 |
| Sdel_0010 | Sdel_0006 | Sdel_0010 | Sdel_0006 | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: cff:CFF8240_0004 diguanylate cyclase/phosphodiesterase, putative. | 0.412 |
| Sdel_0010 | Sdel_0008 | Sdel_0010 | Sdel_0008 | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | KEGG: abu:Abu_0634 hypothetical protein. | 0.517 |
| Sdel_0010 | Sdel_0011 | Sdel_0010 | Sdel_0011 | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | Hypothetical protein. | 0.450 |
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