STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sdel_0022TIGRFAM: nickel ABC transporter, permease subunit NikC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: wsu:WS0986 oligopeptide ABC transporter permease. (273 aa)    
Predicted Functional Partners:
Sdel_0021
TIGRFAM: nickel ABC transporter, permease subunit NikB; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: wsu:WS0985 nickel transport system permease.
 
 0.999
Sdel_0023
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: wsu:WS0987 putative oligopeptide transporter.
 
 0.999
Sdel_0024
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: wsu:WS0988 oligopeptide ABC transporter ATP- binding protein.
 
 0.999
Sdel_2034
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: wsu:WS0981 oligopeptide ABC transporter permease.
 
 0.997
Sdel_0020
TIGRFAM: nickel ABC transporter, periplasmic nickel- binding protein; PFAM: extracellular solute-binding protein family 5; KEGG: wsu:WS0984 putative NikA protein.
 0.993
Sdel_1663
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nis:NIS_1522 ABC transporter, ATP-binding protein.
  
 0.990
Sdel_2033
TIGRFAM: nickel ABC transporter, periplasmic nickel- binding protein; PFAM: extracellular solute-binding protein family 5; KEGG: wsu:WS0982 putative NikA protein.
 0.970
Sdel_0425
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: abu:Abu_0216 oligopeptide ABC transporter, permease protein.
  
 0.945
Sdel_2035
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pmr:PMI2945 ABC transporter, permease protein.
  
  
 
0.903
Sdel_0125
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: wsu:WS0277 amino acid permease ATP-binding protein.
 
    
 0.895
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: S. deleyianum DSM 6946, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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