STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sdel_0057PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: slo:Shew_1535 fumarylacetoacetate (FAA) hydrolase. (204 aa)    
Predicted Functional Partners:
Sdel_0056
PFAM: pseudouridine synthase; KEGG: nis:NIS_0055 ribosomal large subunit pseudouridine synthase D.
  
    0.781
Sdel_0312
PFAM: Aldehyde Dehydrogenase; KEGG: abu:Abu_0378 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.651
Sdel_0055
TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; Adenylosuccinate lyase-like; KEGG: wsu:WS0416 adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
   
 
 0.598
Sdel_0054
Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
       0.538
Sdel_0216
TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; Chorismate mutase; KEGG: cff:CFF8240_0269 chorismate mutase/prephenate dehydratase.
     
 0.482
Sdel_2232
KEGG: cco:CCC13826_2287 citrate (Si)-synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; Belongs to the citrate synthase family.
   
  
 0.449
Sdel_0053
TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; KEGG: cff:CFF8240_1412 aspartate racemase; Belongs to the aspartate/glutamate racemases family.
       0.423
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: S. deleyianum DSM 6946, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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